Author

Farhana Khanam

International Centre for Diarrhoeal Disease ResearchORCID 0000-0002-4158-5995Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Firdausi QadriiD· 2 shared Gordon DouganiD· 2 shared Kathryn E. HoltiD· 2 shared Abhilasha KarkeyiD· 1 shared Agus SalimiD· 1 shared Andrew John PollardiD· 1 shared Anup Adhikari· 1 shared Buddha BasnyatiD· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Firdausi QadriORCID

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2 papers

Recent·Most cited

BioinformaticsCommunications BiologyPeer-reviewedAug 2, 2023

Direct inference and control of genetic population structure from RNA sequencing data

Muhamad Fachrul, Abhilasha Karkey, Mila Shakya…·Michael Inouye

This paper introduces RGStraP, a tool to infer genetic population structure from RNAseq data and shows it can control for population structure in gene expression analyses.

12 citations

humanbulk RNA-seq

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GenomicsPLoS neglected tropical diseasesPeer-reviewedFeb 27, 2020

Population structure and antimicrobial resistance patterns of Salmonella Typhi isolates in Bangladesh from 2004 to 2016

Sadia Isfat Ara Rahman, Zoe A. Dyson, Elizabeth J. Klemm…·Firdausi Qadri

This paper analyzes Salmonella Typhi isolates from Bangladesh 2004-2016 to identify population structure and antimicrobial resistance patterns, finding a decline in H58 genotypes and rise in non-H58 genotypes with fluoroquinolone resistance.

52 citationstop 4%

humanwhole-genome sequencing

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