Author

Abhilasha Karkey

Patan Academy of Health SciencesORCID 0000-0002-5179-650XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Organism:human· 2 Research Focus:batch correction / integration· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

Andrew John PollardiD· 2 shared Buddha BasnyatiD· 2 shared Christoph J. BlohmkeiD· 2 shared Gordon DouganiD· 2 shared Sabina DongoliD· 2 shared Stephen G. BakeriD· 2 shared Thomas C. DartoniD· 2 shared Agus SalimiD· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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2 shared papersBioinformatics

Andrew John PollardORCID

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2 papers

Recent·Most cited

BioinformaticsCommunications BiologyPeer-reviewedAug 2, 2023

Direct inference and control of genetic population structure from RNA sequencing data

Muhamad Fachrul, Abhilasha Karkey, Mila Shakya…·Michael Inouye

This paper introduces RGStraP, a tool to infer genetic population structure from RNAseq data and shows it can control for population structure in gene expression analyses.

12 citations

humanbulk RNA-seq

𝕏 PostBluesky

Molecular BiologyEMBO Molecular MedicinePeer-reviewedAug 30, 2019

Diagnostic host gene signature to accurately distinguish enteric fever from other febrile diseases

Christoph J. Blohmke, Julius Müller, Malick M. Gibani…·Thomas C. Darton

The paper identifies a host gene signature using machine learning to distinguish enteric fever from other febrile diseases with high accuracy.

26 citations

humanbulk RNA-seq

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