Author

Buddha Basnyat

Patan Academy of Health SciencesORCID 0000-0002-1125-2743Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genetics· 2 Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 4 Research Focus:differential expression· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:batch correction / integration· 1 Research Focus:GWAS / association mapping· 1 Approach:machine learning (classical)· 1 Assay:proteomics· 1

Frequent Co-Authors

Abhilasha KarkeyiD· 2 shared Andrew John PollardiD· 2 shared Christoph J. BlohmkeiD· 2 shared Gordon DouganiD· 2 shared Sabina DongoliD· 2 shared Stephen G. BakeriD· 2 shared Thomas C. DartoniD· 2 shared Agus SalimiD· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Abhilasha KarkeyORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

BioinformaticsCommunications BiologyPeer-reviewedAug 2, 2023

Direct inference and control of genetic population structure from RNA sequencing data

Muhamad Fachrul, Abhilasha Karkey, Mila Shakya…·Michael Inouye

This paper introduces RGStraP, a tool to infer genetic population structure from RNAseq data and shows it can control for population structure in gene expression analyses.

12 citations

humanbulk RNA-seq

𝕏 PostBluesky

GeneticsbioRxivPreprintMar 16, 2020

Hypoxia-tolerant vascular endothelial growth factor-A (VEGF-A) and the genetic variations of VEGFA in Sherpa highlanders

Yunden Droma, Takumi Kinjo, Shuhei Nozawa…·Masayuki Hanaoka

This study examines VEGF-A levels and genetic variations in Sherpa highlanders and non-Sherpa lowlanders, finding no hypoxia response in Sherpas and significant genetic differences in VEGFA SNPs.

2 citations

humanproteomics

𝕏 PostBluesky

Molecular BiologyEMBO Molecular MedicinePeer-reviewedAug 30, 2019

Diagnostic host gene signature to accurately distinguish enteric fever from other febrile diseases

Christoph J. Blohmke, Julius Müller, Malick M. Gibani…·Thomas C. Darton

The paper identifies a host gene signature using machine learning to distinguish enteric fever from other febrile diseases with high accuracy.

26 citations

humanbulk RNA-seq

𝕏 PostBluesky

GeneticsPLoS GeneticsPeer-reviewedSep 6, 2018

Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal

Choongwon Jeong, David Witonsky, Buddha Basnyat…·Anna Di Rienzo

The paper identifies genetic evidence of positive and negative selection in Tibetan women from Nepal related to reproductive traits and offspring survival.

86 citationstop 4%

humanwhole-genome sequencing

𝕏 PostBluesky