Author
University of Illinois Urbana-ChampaignORCID 0000-0002-4210-8269Unclaimed ORCID profile · follow to get notified of new preprints
4 papers
Recent·Most cited
Chengze Shen, Baqiao Liu, Kelly Porter Williams, Tandy J. Warnow
EMMA adds unaligned sequences to a constraint alignment with high accuracy and scalability for large datasets.
James Willson, Yasamin Tabatabaee, Baqiao Liu, Tandy J. Warnow
DISCO+QR roots species trees by combining gene duplication loss and incomplete lineage sorting, showing varying accuracy depending on dataset properties.
The paper introduces WITCH-NG, an improved version of WITCH that aligns datasets with sequence length heterogeneity more efficiently while maintaining accuracy.
Chengze Shen, Baqiao Liu, Kelly Porter Williams, Tandy J. Warnow
SALMA improves multiple sequence alignment accuracy and scalability for large datasets with high evolutionary rates and sequence length variation.