Author

Huakun Zhang

Northeast Normal UniversityORCID 0000-0002-4292-9040Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 3 Research Focus:differential expression· 2 Organism:Arabidopsis· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Haopeng YuiD· 3 shared Yiliang DingiD· 3 shared Xiaofei YangiD· 2 shared Chun Kit KwokiD· 1 shared Haifeng LiuiD· 1 shared Heng YangiD· 1 shared J. Benjamin MilleriD· 1 shared Jie Liang· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersPlant Biology

Haopeng YuORCID

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3 papers

Recent·Most cited

PlantScience.ai: An LLM-Powered Virtual Scientist for Plant Science

Haopeng Yu, Shasha Zhou, Mingyu Huang, Ling Ding, Yuxuan Chen, Yinru Wang, Yingyu Ren, Nuo Cheng, Xinya Wang, Jie Liang, Huakun Zhang, Yiliang Ding, Ke Li

PlantScience.ai couples an LLM-built, continuously updated plant science knowledge graph (4.0 million entities, 10.8 million edges) with graph-based retrieval for citation-traceable plant biology answers.

Molecular Plant · Mar 21, 2026Peer-reviewedPlant Biology✦ In-depth digest

PlantRNA-FM: An Interpretable RNA Foundation Model for Exploration Functional RNA Motifs in Plants

Haopeng Yu, Heng Yang, Wenqing Sun, Zongyun Yan, Xiaofei Yang, Huakun Zhang, Yiliang Ding, Ke Li

PlantRNA-FM is an interpretable RNA foundation model that improves RNA annotation and translation efficiency prediction in plants by identifying functional RNA motifs.

bioRxiv · Jun 24, 2024 · PreprintBioinformatics

RNA G-quadruplex structure contributes to cold adaptation in plants

Xiaofei Yang, Haopeng Yu, Susan Hanley Duncan, Yueying Zhang, Jitender Cheema, Haifeng Liu, J. Benjamin Miller, Jie Zhang, Chun Kit Kwok, Huakun Zhang, Yiliang Ding

The paper identifies G-quadruplex structures in cold-adapted plants, showing they enhance mRNA stability and improve cold response.

Nature Communications · Oct 20, 2022Peer-reviewedMolecular Biology