Balázs Kakuk

The paper reanalyzes sequencing data to reconstruct full-length monkeypox virus transcripts and shows temporal changes in gene regulation and transcript structure.

This study compares full-length ONT 16S and shotgun metagenomics in canine fecal samples, finding high functional concordance but lower taxonomic agreement, with host-specific references improving taxonomic consistency.

The paper presents DogMAG, a canine gut metagenome resource with assembled bacterial genomes and viral candidates using long-read and hybrid sequencing.

The paper profiles gut microbiota changes in astronauts during short-duration spaceflight and finds individualized, temporally localized shifts rather than uniform restructuring.

This study tracks the maturation of the canine gut microbiome through early life, showing it follows an age-diet trajectory but remains constrained by host-specific factors.

This study evaluates how DNA extraction, primer selection, and sequencing platforms affect canine gut microbiome profiling by generating a large, standardized dataset for benchmarking bioinformatics pipelines.

This study uses CAGE and long-read RNA sequencing to analyze the transcriptional architecture of human monkeypox virus, identifying alternative TSSs, TESs, promoter elements, and novel genes.

The paper uses long-read sequencing to identify novel Ori-proximal transcripts in herpesviruses, revealing regulatory complexity in DNA replication and transcription.

This study uses high-temporal-resolution nanopore sequencing to analyze SARS-CoV-2 and host cell transcriptomes at high coverage with a high virus titer.

This study uses long-read sequencing to analyze the human cytomegalovirus transcriptome, identifying novel transcript variants and complex transcriptional overlaps.