Author

Gergely Ármin Nagy

University of SzegedORCID 0000-0002-7262-2533Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Assay:long-read sequencing· 3 Approach:statistical model· 2 Assay:CITE-seq· 1 Approach:deep learning· 1 Organism:human· 1 Organism:virus· 1

Frequent Co-Authors

Ákos DörmőiD· 3 shared Balázs KakukiD· 3 shared Dóra TombácziD· 3 shared István PrazsákiD· 3 shared Zsolt BoldogkőiiD· 3 shared Zsolt CsabaiiD· 3 shared Daniel RůžekiD· 2 shared Gábor KemenesiiD· 2 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersMicrobiology

Ákos DörmőORCID

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3 papers

Recent·Most cited

Isoform-Resolved Temporal Remodeling of Transcriptome Architecture in Monkeypox Virus

Gergely Ármin Nagy, Balázs Kakuk, Zsolt Csabai, Ákos Dörmő, István Prazsák, Daniel Růžek, Jiří Holoubek, Gábor Kemenesi, Dóra Tombácz, Zsolt Boldogkői

The paper reanalyzes sequencing data to reconstruct full-length monkeypox virus transcripts and shows temporal changes in gene regulation and transcript structure.

bioRxiv · Oct 28, 2026 · PreprintMicrobiology

Exploring the Transcriptomic Profile of Human Monkeypox Virus via CAGE and Native RNA Sequencing Approaches

Gergely Ármin Nagy, Dóra Tombácz, István Prazsák, Zsolt Csabai, Ákos Dörmő, Gábor Máté Gulyás, Gábor Kemenesi, Gábor Endre Tóth, Jiří Holoubek, Daniel Růžek, Balázs Kakuk, Zsolt Boldogkői

This study uses CAGE and long-read RNA sequencing to analyze the transcriptional architecture of human monkeypox virus, identifying alternative TSSs, TESs, promoter elements, and novel genes.

mSphere · Aug 27, 2024Peer-reviewedMicrobiology

Novel Herpesvirus Transcripts with Putative Regulatory Roles in DNA Replication and Global Transcription

Gábor Torma, Dóra Tombácz, Islam A. A. Almsarrhad, Zsolt Csabai, Gergely Ármin Nagy, Balázs Kakuk, Gábor Máté Gulyás, Lauren McKenzie Spires, Ishaan Gupta, Ádám Fülöp, Ákos Dörmő, István Prazsák, Máté Mizik, Virág Éva Dani, Viktor Csányi, , Zsolt Boldogkői

The paper uses long-read sequencing to identify novel Ori-proximal transcripts in herpesviruses, revealing regulatory complexity in DNA replication and transcription.

bioRxiv · Mar 25, 2023 · PreprintMolecular Biology