Gábor Máté Gulyás

Taxonomic and functional concordance between full-length ONT 16S and ONT shotgun metagenomics in the canine gut microbiome

This study compares full-length ONT 16S and shotgun metagenomics in canine fecal samples, finding high functional concordance but lower taxonomic agreement, with host-specific references improving taxonomic consistency.

Full-length 16S profiling reveals individualized gut microbiota dynamics during short-duration spaceflight

The paper profiles gut microbiota changes in astronauts during short-duration spaceflight and finds individualized, temporally localized shifts rather than uniform restructuring.

Early-life canine gut microbiome maturation follows a shared age-diet trajectory within persistent host-specific structure

This study tracks the maturation of the canine gut microbiome through early life, showing it follows an age-diet trajectory but remains constrained by host-specific factors.

Longitudinal Long-Read Microbiome Profiling in a Canine Model Reveals How Age, Diet, and Birth Mode Shape Gut Community Dynamics

This study uses longitudinal long-read 16S rRNA sequencing in dogs to show how age, diet, and birth mode shape gut microbiome development, revealing structured transitions and delivery-mode effects.

Comprehensive Metagenomic Profiling of Diverse Microbiomes

This study evaluates how DNA extraction, primer selection, and sequencing platforms affect canine gut microbiome profiling by generating a large, standardized dataset for benchmarking bioinformatics pipelines.

Exploring the Transcriptomic Profile of Human Monkeypox Virus via CAGE and Native RNA Sequencing Approaches

This study uses CAGE and long-read RNA sequencing to analyze the transcriptional architecture of human monkeypox virus, identifying alternative TSSs, TESs, promoter elements, and novel genes.

Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses

The paper describes open data sharing, analysis tools, and lessons learned from the European COVID-19 Data Platform's SARS-CoV-2 data collection and analysis efforts.

Novel Herpesvirus Transcripts with Putative Regulatory Roles in DNA Replication and Global Transcription

The paper uses long-read sequencing to identify novel Ori-proximal transcripts in herpesviruses, revealing regulatory complexity in DNA replication and transcription.

High-Spatiotemporal-Resolution Nanopore Sequencing of SARS-CoV-2 and Host Cell RNAs

This study uses high-temporal-resolution nanopore sequencing to analyze SARS-CoV-2 and host cell transcriptomes at high coverage with a high virus titer.

Time-course Profiling of Bovine Herpesvirus Type 1 and Host Cell Transcriptomes using Multiplatform Sequencing

This study profiles the dynamic lytic transcriptome of BoHV-1 using long-read sequencing and assesses its impact on the host cell transcriptome, revealing complex transcriptional overlaps and upregulated antiviral and viral genes.

Demand for Multiplatform and Meta-analytic Approaches in Transcriptome Profiling

The paper reanalyzes an HSV-1 transcriptome dataset using multiplatform and meta-analytic approaches to highlight the necessity of such methods for reliable transcriptome profiling.

Multiple Long-read Sequencing Survey of Herpes Simplex Virus Lytic Transcriptome

This study uses long-read sequencing to characterize the HSV-1 lytic transcriptome, identifying over 160 new transcripts and revealing complex transcriptional overlaps and novel features.