Author

Catarina Rocha

Technical University of DenmarkORCID 0000-0002-4379-3149Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Systems Biology· 2 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 3 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Assay:metabolomics· 1 Assay:metagenomics· 1 Research Focus:perturbation response prediction· 1 Assay:proteomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Stefano DonatiiD· 3 shared Lars Keld NielseniD· 2 shared Pablo I. NikeliD· 2 shared Carina MeinersiD· 1 shared Daniel C. VolkeiD· 1 shared Giusi FavoinoiD· 1 shared Magnus G. JesperseniD· 1 shared Mariana Arango SaavedraiD· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersSystems Biology

Stefano DonatiORCID

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3 papers

Recent·Most cited

Automated mini-bioreactors reveal the temporal dynamics and multi-omics responses of CRISPRi knockdowns in Pseudomonas putida

Mariana Arango Saavedra, Sara Grassi, Magnus G. Jespersen, Catarina Rocha, Vijayalakshmi Kandasamy, Lars Keld Nielsen, Pablo I. Nikel, Stefano Donati

The paper uses automated mini-bioreactors to study the temporal dynamics and multi-omics responses of CRISPRi knockdowns in Pseudomonas putida, identifying a critical time window for phenotypic impact.

ACS Synthetic Biology · Sep 18, 2026Peer-reviewedSynthetic Biology

A Robust Isotope Ratio LC-MS/MS Workflow for High-Throughput Metabolic Profiling of Bacteria

Catarina Rocha, Sergi Pujol Pinto, Sheila Ingemann Jensen, Lars Keld Nielsen, Stefano Donati

The paper presents a robust LC-MS/MS workflow for high-throughput metabolic profiling of bacteria using stable isotope dilution mass spectrometry.

Analytical Chemistry · Aug 8, 2026Peer-reviewedSystems Biology

Integrated control of redox and energy metabolism by the membrane-bound and soluble transhydrogenases of Pseudomonas putida across metabolic regimes

Michele Partipilo, Giusi Favoino, Òscar Puiggené, Catarina Rocha, Carina Meiners, Nicolás Gurdo, Stefano Donati, Daniel C. Volke, Pablo I. Nikel

This study investigates how Pseudomonas putida uses two transhydrogenases to maintain redox balance across different metabolic conditions, revealing their essential roles in growth and stress tolerance.

Cell Systems · Jun 23, 2026Peer-reviewedSystems Biology