HGTs are not SPRs: In the presence of ghost lineages, series of Horizontal Gene Transfers do not result in series of Subtree Pruning and Regrafting
Éric Tannier, Théo Tricou, Syrine Benali, Damien M. de Vienne
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Lyon 1 UniversitéORCID 0000-0002-4432-2680Unclaimed ORCID profile · follow to get notified of new preprints
4 papers
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Éric Tannier, Théo Tricou, Syrine Benali, Damien M. de Vienne
Théo Tricou, Enzo Marsot, Bastien Boussau…·Damien M. de Vienne
This paper shows that horizontal gene transfer methods can detect ghost lineages in phylogenies, revealing hidden diversity despite lack of genomic data.
Julien Joseph, Djivan Prentout, Alexandre Laverré…·Laurent Duret
The paper quantifies Prdm9-independent recombination hotspots in 52 mammals, finding that these hotspots are common and often coexist with Prdm9-directed hotspots.
Adrián Davín, Théo Tricou, Éric Tannier…·Gergely J. Szöllősi
Zombi simulates species, genomes, and sequences evolution, including extinct lineages and speciation/extinction rate variations.