Author

Shawn M. Rupp

Arizona State UniversityORCID 0000-0002-4651-6307Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Shawn M. Rupp1 paper

Biology Disciplines

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Genomics· 2 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Organism:multiple species· 1

Frequent Co-Authors

Carlo C. MaleyiD· 2 shared Alexander SuhiD· 1 shared Allison H. S. HalliD· 1 shared Amy M. BoddyiD· 1 shared Angelo FortunatoiD· 1 shared Bent PeterseniD· 1 shared Brigid V. TroaniD· 1 shared Charles G. BarbieriiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersEvolutionary Biology

Carlo C. MaleyORCID

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3 papers

Recent·Most cited

Evolutionary BiologybioRxivPreprintDec 11, 2025

Immune-cancer analyses across mammals reveal a potential trophic level and platelet-linked tradeoff between cancer and trauma mortality

Stefania E. Kapsetaki, Sareh Seyedi, Zachary Taylor Compton…·Amy M. Boddy

The paper analyzes immune-cancer tradeoffs across mammals, finding a negative correlation between cancer and trauma mortality, mediated by platelet size and trophic level.

1 citation

multiple speciesstatistical model

𝕏 PostBluesky

GenomicsBriefings in BioinformaticsPeer-reviewedMay 22, 2021

A new method to accurately identify single nucleotide variants using small FFPE breast samples.

Angelo Fortunato, Diego Mallo, Shawn M. Rupp…·Carlo C. Maley

This paper develops and validates a new bioinformatic algorithm to accurately identify somatic SNVs from small DNA amounts in FFPE breast cancer samples, showing improved performance over existing methods.

9 citations

humanwhole-exome sequencing

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GenomicsbioRxivPreprintDec 8, 2019

The tuatara genome: insights into vertebrate evolutionfrom the sole survivor of an ancient reptilian order

Neil J. Gemmell, Kim Rutherford, Stefan Prost…·Ngatiwai Trust Board

The paper presents the tuatara genome, highlighting its evolutionary significance and unique features compared to other vertebrates.

4 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky