Gerard J. Kleywegt

Chart Builder: An Interactive Tool for User Driven Data Visualization in the Electron Microscopy Data Bank

Chart Builder provides an interactive tool for visualizing and exploring metadata from cryoEM archives, enabling users to create customizable charts and access underlying datasets.

EMDB - The Electron Microscopy Data Bank

The paper provides an overview of the EMDB archive, its current holdings, recent updates, and future plans.

EMPIAR: The Electron Microscopy Public Image Archive

EMPIAR provides a public archive for cryo-EM image data and 3D reconstructions, supporting data deposition, search, visualization, and programmatic access.

Validation analysis of EMDB entries

The paper describes a three-tiered validation system for cryo-EM structures in EMDB, focusing on data quality and model fitting, with tier 1 providing extensive metrics and tier 3 integrating with wwPDB.

The BioImage Archive - building a home for life-sciences microscopy data

The BioImage Archive provides a centralized repository for biological imaging data to enhance reproducibility, reuse, and development of image analysis tools.

3D-Strudel - a novel model-dependent map-feature validation method for high-resolution cryo-EM structures

The paper introduces 3D-Strudel, a method for validating cryo-EM maps using resolution-dependent amino-acid motifs, and presents a visualization tool for results.