Author

Abdul Rehman Basharat

Indiana University IndianapolisORCID 0000-0002-4675-5375Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:software / tool· 3 Approach:experimental assay· 2 Assay:proteomics· 2 Research Focus:drug response / drug discovery· 1 Organism:E. coli· 1 Approach:machine learning (classical)· 1 Research Focus:perturbation response prediction· 1

Frequent Co-Authors

Liangliang SuniD· 2 shared Xiaowen LiuiD· 2 shared Yong ZangiD· 2 shared Amina BibiiD· 1 shared Amir FaisaliD· 1 shared Ammar ArifiD· 1 shared Bilal WajidiD· 1 shared Emad UddiniD· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Liangliang SunORCID

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3 papers

Recent·Most cited

TopDIA: A Software Tool for Top-Down Data-Independent Acquisition Proteomics

Abdul Rehman Basharat, Xingzhao Xiong, Tian Xu, Yong Zang, Liangliang Sun, Xiaowen Liu

TopDIA is a software tool for proteoform identification using TD-DIA-MS, showing improved identification compared to TD-DDA-MS in E. coli.

Journal of Proteome Research · Dec 6, 2024Peer-reviewedBioinformatics

TopFD - A Proteoform Feature Detection Tool for Top-Down Proteomics

Abdul Rehman Basharat, Yong Zang, Liangliang Sun, Xiaowen Liu

TopFD is a tool for top-down proteomics that improves proteoform feature detection accuracy and reproducibility compared to existing methods.

Analytical Chemistry · May 17, 2023Peer-reviewedBioinformatics

TISON: a next-generation multi-scale modeling theatre for in silico systems oncology

Mahnoor Naseer Gondal, Muhammad Umer Sultan, Ammar Arif, Abdul Rehman Basharat, Hira A. Awan, Zainab Arshad, Waleed Ahmed, Muhammad FA Chaudhary, Salaar Khan, Zain Bin Tanveer, Rida Nasir Butt, Risham Hussain, Huma Khawar, Amina Bibi, Rida Akbar, , Safee Ullah Chaudhary

TISON is a web-based platform for multi-scale cancer modeling that integrates biomolecular data and patient-specific information to support drug target discovery and personalized therapeutics.

bioRxiv · May 4, 2021 · PreprintSystems Biology