Axel Andersson

This study evaluates the Xenium In Situ spatial transcriptomics platform using mouse brain and human breast cancer datasets, comparing it to other technologies and benchmarking analysis tools.

Points2Regions clusters spatial transcriptomics data to identify biologically relevant regions across multiple scales efficiently and interactively.

TissUUmaps 3 improves interactive visualization and exploration of large-scale spatial omics data through optimizations and new modules for analysis and quality assessment.

The paper introduces three plugins for visualization and quality control in large-scale multiplex tissue analysis to improve accuracy and user trust in automated approaches.

ISTDECO improves gene expression decoding in IST data by combining spot localization and barcode decoding into a single algorithm, achieving state-of-the-art performance in noisy and crowded conditions.