Author

Yibo Dong

Florida Department of HealthORCID 0000-0002-5264-1382Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Xiaoming LiuiD· 2 shared Andy PerkinsiD· 1 shared Calin B. Chiribau· 1 shared Camilla Valente PiresiD· 1 shared Chang LiiD· 1 shared Chengqi C. Q. WangiD· 1 shared Jenna OberstalleriD· 1 shared John H. AdamsiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Xiaoming LiuORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

PathoBench: an open community-driven benchmark registry for pathogen bioinformatics tools

Yibo Dong, Na Li, Calin B. Chiribau, Molly Mitchell, Xiaoming Liu, Andy Perkins

PathoBench provides a benchmark registry for pathogen bioinformatics tools, enabling standardized evaluation and comparison across 10 pathogens using curated datasets and metrics.

bioRxiv · Jul 17, 2026 · PreprintBioinformatics

MalariaSED: a deep learning framework to decipher the regulatory contributions of noncoding variants in malaria parasites

Chengqi C. Q. Wang, Yibo Dong, Chang Li, Jenna Oberstaller, Min Zhang, Justin Gibbons, Camilla Valente Pires, Mianli Xiao, Lei Zhu, Rays H. Y. Jiang, Kami Kim, Jun Miao, Thomas D. Otto, Liwang Cui, John H. Adams, Xiaoming Liu

MalariaSED predicts chromatin profiles in malaria parasites and identifies noncoding variants linked to invasion and drug resistance.

Genome biology · Oct 16, 2023Peer-reviewedBioinformatics