Maciej Antczak

RNAbridge is a database that identifies and visualizes non-canonical RNA helices and junctions using structural data from the Protein Data Bank.

RNApdbee 3.0 provides a unified web server for RNA secondary structure annotation using 3D coordinates, integrating 2D and 3D data and standardizing inputs to PDBx/mmCIF.

RNAtive evaluates RNA 3D models using consensus secondary structures without experimental references, identifying native-like folds in computational predictions.

The paper analyzes 3D RNA structure prediction models from CASP15 and finds that all entanglements are artifacts, with ML methods more prone to generating them than traditional methods.

The paper reports RNA 3D structure prediction results for SARS-CoV-2 5'- and 3'-UTRs using computational methods and expert analysis.

The paper evaluates the stereochemical quality of RNA 3D models from RNA-Puzzles submissions and identifies deviations from standard RNA stereochemistry.