Author

Bartosz A. Gren

University of WarsawORCID 0000-0001-9971-6807Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:protein structure· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Research Focus:protein structure prediction· 1 Approach:statistical model· 1

Frequent Co-Authors

Joanna Ida SulkowskaiD· 2 shared Agata P. PerlinskaiD· 1 shared Maciej AntczakiD· 1 shared Marta SzachniukiD· 1 shared Paweł RubachiD· 1 shared Tomasz ŻokiD· 1 shared Wanda H. NiemyskaiD· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 12 mutual co-author links

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2 shared papersBioinformatics

Joanna Ida SulkowskaORCID

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2 papers

Recent·Most cited

BioinformaticsPLoS Computational BiologyPeer-reviewedJun 20, 2024

Knotted artifacts in predicted 3D RNA structures

Bartosz A. Gren, Maciej Antczak, Tomasz Żok…·Marta Szachniuk

The paper analyzes 3D RNA structure prediction models from CASP15 and finds that all entanglements are artifacts, with ML methods more prone to generating them than traditional methods.

9 citations

protein structurestatistical model

𝕏 PostBluesky

Molecular BiologybioRxivPreprintDec 30, 2021

New 63 knot and other knots in human proteome from AlphaFold predictions

Agata P. Perlinska, Wanda H. Niemyska, Bartosz A. Gren…·Joanna Ida Sulkowska

The paper analyzes AlphaFold-predicted human protein structures to identify knots, finding 65 robustly knotted proteins, including a new complex knot type.

3 citations

humanprotein structure

𝕏 PostBluesky