CALFP-MHC: Interpretable Pan-Allelic Prediction of Peptide-MHC Binding and Presentation Using Chemically Grounded Fingerprints and Contrastive Learning
My-Diem Nguyen Pham, Thi Kim Cuong Ho, Hoai‐Nghia Nguyen…·Vy Nguyen
CALFP-MHC improves peptide-MHC binding prediction by using chemically grounded fingerprints and contrastive learning, achieving high AUC and PPV across diverse alleles and class imbalance.