Athina Vidaki

ECHO is a nanopore sequencing pipeline for comprehensive (epi)genetic analysis of the human repeatome, enabling haplotype-resolved and methylation-informative studies.

qBiCo is a quality-control method for bisulfite-converted DNA that measures conversion efficiency, fragmentation, and concentration using qPCR, showing reliable performance across platforms and kits.

This paper introduces aps-lm, a linear regression method that predicts outcomes from incomplete datasets without imputation, showing improved accuracy and reduced bias compared to imputation strategies.

The paper introduces Binokulars and JRC_sorter to map epigenetic variation by analyzing pooled sequencing data, identifying joint CpG regulation and epigenetic processes like imprinting and mQTL.

This study evaluates how compromised DNA affects kinship classification success using SNP microarray data in investigative genetic genealogy.