Author

Loïs Maignien

Centre National de la Recherche ScientifiqueORCID 0000-0002-5571-5228Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Assay:metagenomics· 2 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Organism:human· 1 Research Focus:variant calling· 1

Frequent Co-Authors

A. Murat EreniD· 1 shared Anthony C. WooiD· 1 shared Blandine TroucheiD· 1 shared Catherine BadeliD· 1 shared Cathy Liautard‐Haag· 1 shared Clémence Lauden· 1 shared Colomban de VargasiD· 1 shared Damien CourtineiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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Curved chords = mutual co-authorship

1 shared paperMicrobiology

A. Murat ErenORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintOct 2, 2026

Thermococcales pangenome uncovers new genera and modular evolution.

Ryan J. Catchpole, Clémence Lauden, Damien Courtine…·Violette Da Cunha

The paper analyzes the Thermococcales pangenome to identify new genera and reveal modular evolution through horizontal gene transfer.

DOI 10.64898/2026.09.28.752058

whole-genome sequencingstatistical model

𝕏 PostBluesky

MicrobiologybioRxivPreprintJan 15, 2025

Quantitative insights into the efficacy of genome-resolved surveys of microbial communities through ribosomal protein phylogeography and EcoPhylo

Matthew S. Schechter, Florian Trigodet, Iva Veseli…·A. Murat Eren

The paper introduces EcoPhylo, a computational workflow to assess genome recovery rates in microbial communities using ribosomal protein phylogeography, applied to human gut and oral cavity data.

4 citations

humanmetagenomics

𝕏 PostBluesky

GenomicsFrontiers in Marine SciencePeer-reviewedMay 8, 2020

An assessment of environmental metabarcoding protocols aiming at favouring contemporary biodiversity in inventories of deep-sea communities

Miriam I. Brandt, Blandine Trouche, Nicolas Henry…·Sophie Arnaud‐Haond

This study evaluates eDNA metabarcoding protocols for deep-sea biodiversity, finding that DNA is more reliable than RNA and larger sediment samples improve accuracy.

47 citations

metagenomicsstatistical model

𝕏 PostBluesky