Author

Florian Trigodet

Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und MeeresforschungORCID 0000-0002-4933-2896Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Microbiology· 3 Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:metagenomics· 4 Research Focus:benchmarking· 2 Approach:experimental assay· 2 Assay:long-read sequencing· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Organism:bacteria (other)· 1 Research Focus:clustering· 1

Frequent Co-Authors

A. Murat EreniD· 5 shared Iva VeseliiD· 2 shared Kelle C. FreeliD· 2 shared Metehan SeveriD· 2 shared Michael S. RappéiD· 2 shared Samuel E. MilleriD· 2 shared Sarah J. TuckeriD· 2 shared Alexander HenochiD· 1 shared

Activity by Year

2021-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

5 shared papersMicrobiology

A. Murat ErenORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Synteny-aware microbial pangenome graphs reveal blueprints of genomic variation

Alexander Henoch, Metehan Sever, Sarah J. Tucker, Florian Trigodet, Iva Veseli, Tianyi Chang, James O. McInerney, Arda Söylev, Kelle C. Freel, Michael S. Rappé, A. Murat Eren

The paper introduces synteny-aware pangenome graphs to visualize genomic variation in marine bacteria, revealing structured continua of variability across genomes.

bioRxiv · Jul 3, 2026 · PreprintMicrobiology

A high-resolution diel survey of surface ocean metagenomes, metatranscriptomes, and transfer RNA transcripts

Sarah J. Tucker, Jessika Füssel, Kelle C. Freel, Evan Kiefl, Evan B. Freel, Oscar Ramfelt, Clarisse Sullivan, Andrian P. Gajigan, Hanako Mochimaru, Mariana Rocha de Souza, Mariko Quinn, Ciara Ratum, Leon L. Tran, Marek Sobczyk, Samuel E. Miller, , A. Murat Eren

The paper presents a high-resolution multi-omics dataset of surface ocean metagenomes, metatranscriptomes, and tRNA transcripts collected over 48 hours to study microbial responses to environmental change.

Scientific Data · Dec 4, 2025Peer-reviewedMicrobiology

Assemblies of long-read metagenomes suffer from diverse errors

Florian Trigodet, Rohan Sachdeva, Jillian F. Banfield, A. Murat Eren

The paper evaluates errors in long-read metagenome assemblers and identifies common issues like chimeras and phantom sequences.

bioRxiv · Apr 22, 2025 · PreprintBioinformatics

Quantitative insights into the efficacy of genome-resolved surveys of microbial communities through ribosomal protein phylogeography and EcoPhylo

Matthew S. Schechter, Florian Trigodet, Iva Veseli, Samuel E. Miller, Matthew L. Klein, Metehan Sever, Loïs Maignien, Tom O. Delmont, Samuel H. Light, A. Murat Eren

The paper introduces EcoPhylo, a computational workflow to assess genome recovery rates in microbial communities using ribosomal protein phylogeography, applied to human gut and oral cavity data.

bioRxiv · Jan 15, 2025 · PreprintMicrobiology

proovframe: frameshift-correction for long-read (meta)genomics

Thomas Hackl, Florian Trigodet, A. Murat Eren, Steven J. Biller, John M. Eppley, Elaine Luo, Andrew H. Burger, Edward F. DeLong, Matthias Fischer

proovframe corrects frameshift errors in long-read (meta)genomics data using protein-to-nucleotide alignments, improving data quality without requiring high sequencing depth.

bioRxiv · Aug 23, 2021 · PreprintBioinformatics