Iva Veseli

The paper introduces synteny-aware pangenome graphs to visualize genomic variation in marine bacteria, revealing structured continua of variability across genomes.

The study identifies chemosynthetic bacteria in the gills of Hypoplectrus reef fishes, revealing their metabolic potential and geographic distribution.

The paper cultivates microbial communities from the Baltic Sea and finds that species in multi-species cultures have smaller genomes and rely on metabolic partners.

The paper introduces EcoPhylo, a computational workflow to assess genome recovery rates in microbial communities using ribosomal protein phylogeography, applied to human gut and oral cavity data.

The paper improves microbial gene annotations by adaptively adjusting significance thresholds, enhancing sensitivity without sacrificing accuracy, especially for non-model organisms and underrepresented protein families.

The paper introduces Digital Microbes, an integrative framework for collaborative research on microbes, demonstrating its application with two case studies involving genomic and transcriptomic data.