Jacob B. Landis

The paper uses genome-wide sequencing to study the evolutionary relationships and biogeography of Hawaiian Doryopteris, finding that phylogeny is more linked to geography and climate than morphology.

BLink-seq is a scalable Haplotagging method for generating phased haplotypes and detecting structural variants in non-model species using short-read sequencing.

The paper analyzes gene tree topology space in the plant genus Glycine, finding a flat distribution of topologies with no clear peak at the species tree, suggesting complex historical signals from introgression and polyploidy.

This study analyzes introgression and adaptive repeatability across 48 Vitis species using whole-genome data, finding widespread introgression and shared genetic variation.

This study analyzes the genetic diversity of farmer-maintained Theobroma cacao in Costa Rica, revealing previously uncharacterized local genetic groups and highlighting the importance of farmer-managed systems for conservation.

The paper investigates how canalized gene regulatory networks maintain floral polymorphism in Stellera chamaejasme by analyzing transcriptomic and regulatory variation across morphs.

The paper investigates the formation of ectopic cambia in Japanese wisteria using anatomical, transcriptomic, and evolutionary analyses, finding conserved KNOX genes involved in atypical vascular development.

This study uses population genomics to analyze genetic diversity in Sabal minor, finding that caulescent and acaulescent forms are phenotypic variants of a single species, not separate species.

The paper tests AVITI library prep miniaturization and compares its performance with Illumina for phylogenomic and population genomic analyses, finding high congruence but some issues with miniaturized data.

This study compares reduced-representation and genome-wide data in phylogenomics and population genomics, finding that genome-wide data retain more SNPs, show higher heterozygosity, and provide better phylogenetic support.

This study uses phylogenomic analyses to investigate the evolutionary history of Section Nintooa, revealing rapid radiation and reticulate evolution between Hainan, South China mainland, and Vietnam.

The paper tracks genetic and phenotypic evolution in a century-long barley experiment, showing natural selection reduces diversity to a single clonal lineage by generation F50.

nQuack predicts ploidy from sequence data using site-based heterozygosity, improving upon existing methods with model selection and simulation.

This study uses population genomic analyses to investigate the reproductive mode of Kingdonia uniflora, finding evidence of both asexual reproduction and rare sexual reproduction events.

The paper uses genome-wide sequencing to show how environmental heterogeneity drives genetic structure and local adaptation in the alpine herb Circaeaster agrestis.

This study presents the draft genome of Kingdonia uniflora, revealing evolutionary mechanisms and genetic features linked to its specialized adaptation and endangered status.