Author

Dávid Czimer

Eötvös Loránd UniversityORCID 0000-0002-5689-1565Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:genome assembly· 1 Assay:imaging· 1 Research Focus:software / tool· 1 Assay:whole-genome sequencing· 1 Organism:zebrafish· 1

Frequent Co-Authors

Máté VargaiD· 2 shared Ádám MiklósiiD· 1 shared András VáradiiD· 1 shared Anita RácziD· 1 shared Arang RhieiD· 1 shared Balázs NagyiD· 1 shared Bi Wei LowiD· 1 shared Blanka Kapusi· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersDevelopmental Biology

Máté VargaORCID

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2 papers

Recent·Most cited

SCAMP - an open-source tool for the quantification of calcification in fish larvae

Dávid Czimer, Panna Kaluzsa, József Kövendi, Kamilla Luca Li, Blanka Kapusi, Viola Pomozi, Krisztina Fülöp, Balázs Nagy, Csaba Benedek, András Váradi, Máté Varga

SCAMP quantifies calcification in fish larvae by straightening the notochord and generating standardized mineralization profiles, revealing genotype-specific differences and the effects of inorganic pyrophosphate and methylene blue.

bioRxiv · Oct 13, 2026 · PreprintDevelopmental Biology

The reference genome of the paradise fish (Macropodus opercularis)

Erika Fodor, Javan Okendo, Nóra Szabó, Kata Sára Szabó, Dávid Czimer, Anita Rácz, Ildikó Szeverényi, Bi Wei Low, Jia Huan Liew, Sergey Koren, Arang Rhie, László Orbán, Ádám Miklósi, Máté Varga, Shawn Michael Burgess

The paper reports the reference genome of the paradise fish (Macropodus opercularis) using long-read sequencing, identifying 20,157 protein-coding genes and demonstrating high completeness.

bioRxiv · Aug 10, 2023 · PreprintGenomics