Author

Adam Wright

Ontario Institute for Cancer ResearchORCID 0000-0002-5719-4024Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Adam Wright1 paper · Queen's University Belfast

Biology Disciplines

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Bioinformatics· 1 Scientific Communication & Education· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 3 Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Approach:large language model· 1 Approach:mixed model· 1

Frequent Co-Authors

Lincoln David SteiniD· 3 shared Marija Orlic-MilaciciD· 2 shared Amin MawaniiD· 1 shared Bijay JassaliD· 1 shared Bruce MayiD· 1 shared Chris MungalliD· 1 shared Chuqiao GongiD· 1 shared Cristoffer SevillaiD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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3 shared papersScientific Communication & Education

Lincoln David SteinORCID

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3 papers

Recent·Most cited

Scientific Communication & EducationbioRxivPreprintDec 12, 2025

✦ In-depth digest

React-to-Me: A Conversational Interface for Interactive Exploration of the Reactome Pathway Knowledgebase.

Helia Mohammadi, Fatemeh Almodaresi, Gregory F J Hogue…·Lincoln David Stein

React-to-Me, a retrieval-augmented chatbot grounding GPT-4o-mini in curated Reactome pathways with hyperlinked citations, earned higher blinded expert ratings than ungrounded GPT-4o-mini (odds ratio 2.01).

DOI 10.64898/2025.12.12.693752

humanlarge language model

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BioinformaticsBriefings in BioinformaticsPeer-reviewedMar 27, 2024

FAIR Header Reference genome: A TRUSTworthy standard

Adam Wright, Mark D. Wilkinson, Chris Mungall…·David C. Molik

The paper introduces FHR, a metadata standard for reference genome data to improve interoperability and data provenance tracking across platforms.

2 citations

database / resource

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Systems BiologyDatabasePeer-reviewedJan 1, 2024

Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes

Marija Orlic-Milacic, Karen Rothfels, Lisa R. Matthews…·Guanming Wu

The paper annotates disease variants in the context of biological pathways to infer molecular phenotypes and model variant impacts.

4 citations

humanstatistical model

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