Author

Joanne Stockton

University of BirminghamORCID 0000-0002-5797-8275Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetic & Genomic Medicine· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Andrew David BeggsiD· 2 shared Adam T. GrundhoffiD· 1 shared Agata Stodolna· 1 shared Boris NoyvertiD· 1 shared C. David Wood· 1 shared Christy Susan VargheseiD· 1 shared Csilla VárnaiiD· 1 shared Daniel BlakewayiD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersMicrobiology

Andrew David BeggsORCID

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2 papers

Recent·Most cited

MicrobiologyPLoS PathogensPeer-reviewedJan 27, 2025

Repression of CADM1 transcription by HPV type 18 is mediated by three-dimensional rearrangement of promoter-enhancer interactions

Karen Campos-León, Jack Ferguson, Thomas Günther…·Joanna L. Parish

This study shows that HPV18 infection reprograms host transcription by altering CTCF binding and promoter-enhancer interactions, leading to repression of the tumor suppressor CADM1.

3 citations

humanbulk RNA-seq

𝕏 PostBluesky

Genetic & Genomic MedicineGenome MedicinePeer-reviewedFeb 25, 2021

Clinical-grade whole genome sequencing of colorectal cancer and 3-prime transcriptome analysis demonstrate targetable alterations in the majority of patients.

Agata Stodolna, Miao He, Mahesh Vasipalli…·Andrew David Beggs

The paper uses clinical-grade whole genome sequencing and 3' transcriptome analysis to identify targetable genomic alterations in colorectal cancer patients.

9 citations

humanwhole-genome sequencing

𝕏 PostBluesky