Alexandr Ignatchenko

Advances in protein function prediction from the fifth CAFA challenge

This work analyzes CAFA5 submissions, showing improved accuracy in protein function prediction and highlights the role of protein language models and 3D structures in performance gains.

Annotation of biologically relevant ligands in UniProtKB using ChEBI

The paper reannotates ligand binding sites in UniProtKB using ChEBI identifiers and improves search facilities for these annotations.

A GO catalogue of human DNA-binding transcription factors

The paper curates a comprehensive catalogue of human DNA-binding transcription factors using Gene Ontology definitions and provides access to it via an online resource.