Author

Pascale Gaudet

SIB Swiss Institute of BioinformaticsORCID 0000-0003-1813-6857Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 3

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 3 Research Focus:database / resource· 2 Organism:human· 2 Assay:protein sequence· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1

Frequent Co-Authors

Alexandr IgnatchenkoiD· 2 shared Antonia LockiD· 2 shared Marc FeuermanniD· 2 shared Maria Jesus MartiniD· 2 shared Ruth C. LoveringiD· 2 shared Sylvain PouxiD· 2 shared Abdulrahman HusseiniD· 1 shared Alan James BridgeiD· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Alexandr IgnatchenkoORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedDec 9, 2022

Annotation of biologically relevant ligands in UniProtKB using ChEBI

Elisabeth Coudert, Sébastien Géhant, Edouard de Castro…·Elena Speretta

The paper reannotates ligand binding sites in UniProtKB using ChEBI identifiers and improves search facilities for these annotations.

350 citationstop 1%

protein sequencestatistical model

𝕏 PostBluesky

BioinformaticsBiochimica et Biophysica Acta (BBA) - Gene Regulatory MechanismsPeer-reviewedOct 19, 2021

A GO catalogue of human DNA-binding transcription factors

Ruth C. Lovering, Pascale Gaudet, Márcio Luís Acencio…·Colin Logie

The paper curates a comprehensive catalogue of human DNA-binding transcription factors using Gene Ontology definitions and provides access to it via an online resource.

43 citations

humanprotein sequence

𝕏 PostBluesky

BioinformaticsOpen BiologyPeer-reviewedSep 1, 2020

Term Matrix: A novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns

Valerie Wood, Seth Carbon, Midori A. Harris…·Chris Mungall

The paper introduces a Gene Ontology annotation quality control system that identifies and corrects errors in gene product co-annotation by analyzing mutual exclusivity patterns across biological processes.

14 citations

𝕏 PostBluesky