Author
Radboud University NijmegenORCID 0000-0002-8534-6582Unclaimed ORCID profile · follow to get notified of new preprints
Mutual co-authors in cluster
5 papers
Recent·Most cited
Hannah K. Neikes, Rik G.H. Lindeboom, Cathrin Gräwe, Lieke A. Lamers, Marijke P. A. Baltissen, Pascal W.T.C. Jansen, Simon J. van Heeringen, Colin Logie, Sarah Amalia Teichmann, Michiel Vermeulen
The paper quantifies how chromatin context affects transcription factor binding affinities genome-wide and shows DNA accessibility is the main determinant.
bioRxiv · Apr 4, 2022 · PreprintGenomics
Ruth C. Lovering, Pascale Gaudet, Márcio Luís Acencio, Alexandr Ignatchenko, Arttu Jolma, Oriol Fornés, Martin T. R. Kuiper, Ivan V. Kulakovskiy, Astrid Lægreid, Maria Jesus Martin, Colin Logie
The paper curates a comprehensive catalogue of human DNA-binding transcription factors using Gene Ontology definitions and provides access to it via an online resource.
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · Oct 19, 2021Peer-reviewedBioinformatics
Luca Nanni, Cheng Wang, Freek Manders, Laszlo A. Groh, Paula Haro, Roel Oldenkamp, Stefano Ceri, Colin Logie
The paper investigates how CTCF site orientation relates to TAD structure by analyzing 4C data and spatial CTCF patterns, finding divergent sites at TAD boundaries and convergent sites within TADs.
bioRxiv · Sep 1, 2019 · PreprintGenomics
Jieqiong Qu, Sabine E.J. Tanis, Jos P.H. Smits, Evelyn N. Kouwenhoven, Martin Oti, Ellen H. J. van den Bogaard, Colin Logie, Hendrik G. Stunnenberg, Hans van Bokhoven, Klaas W. Mulder, Huiqing Zhou
This study investigates how p63 mutations alter the enhancer landscape in epidermal keratinocytes, affecting cell identity through changes in gene regulation.
Cell Reports · Dec 1, 2018Peer-reviewedMolecular Biology
Daniel Rico, Joost H.A. Martens, Kate Downes, Enrique Carrillo de Santa Pau, Véra Pancaldi, Alessandra Breschi, David Richardson, Simon Charles Heath, Sadia Saeed, Mattia Frontini, Lu Chen, Stephen B. Watt, Fabian Müller, Laura Clarke, Hindrik H. D. Kerstens, , Hendrik G. Stunnenberg
This study compares the epigenomes of neutrophils and monocytes to identify regulatory elements and chromatin states, revealing differences in enhancer activity and DNA methylation.
bioRxiv · Dec 22, 2017 · PreprintGenomics