Author

Mustafa İsmail Özkaraca

Institute of Genetics and CancerORCID 0000-0002-6114-1304Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genomics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 1 Assay:GWAS summary statistics· 1 Organism:human· 1 Approach:simulation· 1 Research Focus:software / tool· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-exome sequencing· 1

Frequent Co-Authors

Ailith EwingiD· 1 shared Alastair J. Ironside· 1 shared Albert TenesaiD· 1 shared Alison M. MeynertiD· 1 shared Colin A M SempleiD· 1 shared Devin P Bendixsen· 1 shared Fiona Semple· 1 shared Natalie WilsoniD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 28 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenomics

Ailith EwingORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

GenomicsbioRxivPreprintNov 17, 2025

Frequent Whole-Genome Duplication Events Drive the Genomic Evolution of Triple-Negative Breast Cancer During Neoadjuvant Chemotherapy

Devin P Bendixsen, Fiona Semple, Alastair J. Ironside…·Olga Oikonomidou

This study tracks genomic changes in TNBC during neoadjuvant chemotherapy, finding that whole-genome duplication events drive structural alterations and contribute to tumor evolution and response to treatment.

DOI 10.1101/2025.11.17.688693

humanwhole-exome sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintMar 22, 2023

Schrödinger's Cat in Simulations in Genome-wide Association Studies

Mustafa İsmail Özkaraca, Albert Tenesa

The paper demonstrates a paradox in GWAS where markers can be both causal and non-causal and introduces a software tool to simulate such paradoxical phenotypes.

DOI 10.1101/2023.03.22.533184

GWAS summary statisticssimulation

𝕏 PostBluesky