Author

Matías Giménez

Institut Pasteur de MontevideoORCID 0000-0002-6267-9106Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Assay:metagenomics· 2 Organism:bacteria (other)· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Gregorio IraolaiD· 2 shared Bruno D’AlessandroiD· 1 shared Cecilia SalazariD· 1 shared Christopher E. MasoniD· 1 shared Ebrahim AfshinnekooiD· 1 shared Gastón H. Gonnet· 1 shared Ignacio FerrésiD· 1 shared Pablo FresiaiD· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 29 mutual co-author links

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2 shared papersBioinformatics

Gregorio IraolaORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 4, 2022

Improved detection and classification of plasmids from circularized and fragmented assemblies

Matías Giménez, Ignacio Ferrés, Gregorio Iraola

plaSquid improves plasmid detection and classification from genomic and metagenomic assemblies, revealing increased plasmid diversity and antimicrobial resistance gene distribution.

15 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsMicrobiomePeer-reviewedFeb 28, 2019

City-wide metagenomics uncover antibiotic resistance reservoirs in urban beach and sewage waters

Pablo Fresia, Verónica Antelo, Cecilia Salazar…·Gregorio Iraola

The paper uses metagenomics to analyze urban beach and sewage waters in Montevideo, finding distinct bacterial communities and antibiotic resistance genes in sewage.

182 citationstop 2%

metagenomicsexperimental assay

𝕏 PostBluesky