Author

Ignacio Ferrés

Institut Pasteur de MontevideoORCID 0000-0003-0910-6568Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Organism:bacteria (other)· 2 Research Focus:database / resource· 2 Approach:statistical model· 2 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Gregorio IraolaiD· 3 shared Daniela A. CostaiD· 1 shared Matías GiméneziD· 1 shared Nitin KumariD· 1 shared Pablo FresiaiD· 1 shared Simon LévesqueiD· 1 shared Trevor D. LawleyiD· 1 shared

Activity by Year

2021-2022 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 16 mutual co-author links

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3 shared papersBioinformatics

Gregorio IraolaORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 4, 2022

Improved detection and classification of plasmids from circularized and fragmented assemblies

Matías Giménez, Ignacio Ferrés, Gregorio Iraola

plaSquid improves plasmid detection and classification from genomic and metagenomic assemblies, revealing increased plasmid diversity and antimicrobial resistance gene distribution.

15 citations

bacteria (other)whole-genome sequencing

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BioinformaticsCell Reports MethodsPeer-reviewedSep 1, 2021

Straightforward and reproducible analysis of bacterial pangenomes using Pagoo

Ignacio Ferrés, Gregorio Iraola

The paper introduces Pagoo, a framework for pangenome analysis that integrates data, methods, and visualization for reproducible bacterial evolution studies.

31 citations

bacteria (other)whole-genome sequencing

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GenomicsScientific ReportsPeer-reviewedFeb 9, 2021

Pangenome analysis reveals genetic isolation in Campylobacter hyointestinalis subspecies adapted to different mammalian hosts

Daniela A. Costa, Simon Lévesque, Nitin Kumar…·Gregorio Iraola

The paper analyzes the pangenome of Campylobacter hyointestinalis subspecies to reveal genetic isolation and host adaptation differences.

19 citations

whole-genome sequencingstatistical model

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