Author

Helena Balabin

Hochschule Bonn-Rhein-SiegORCID 0000-0002-6392-9306Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:database / resource· 1 Approach:deep learning· 1 Assay:electronic health records· 1 Organism:human· 1 Assay:metagenomics· 1 Assay:proteomics· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Martin Hofmann‐ApitiusiD· 2 shared Alpha Tom KodamulliliD· 1 shared Benjamin M. GyoriiD· 1 shared Charles Tapley HoytiD· 1 shared Colin J. BirkenbihliD· 1 shared Daniel Domingo‐FernándéziD· 1 shared John A. BachmaniD· 1 shared John GallacheriD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersBioinformatics

Martin Hofmann‐ApitiusORCID

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2 papers

Recent·Most cited

Semantic harmonization of Alzheimer's disease datasets using AD-Mapper

Philipp Wegner, Helena Balabin, Mehmet Can Ay, Sarah Bauermeister, Lewis O. J. Killin, John Gallacher, Martin Hofmann‐Apitius, Yasamin Salimi, the Alzheimer’s Disease Neuroimaging Initiative, the Japanese Alzheimer’s Disease Neuroimaging Initiative, the Aging Brain: Vasculature, Ischemia, and Behavior Study, the Alzheimer’s Disease Repository Without Borders Investigators

This paper introduces AD-Mapper, a tool for semantic harmonization of Alzheimer's disease datasets, which outperforms a string-matching baseline.

Journal of Alzheimer s Disease · May 15, 2024Peer-reviewedBioinformatics

STonKGs: A Sophisticated Transformer Trained on Biomedical Text and Knowledge Graphs

Helena Balabin, Charles Tapley Hoyt, Colin J. Birkenbihl, Benjamin M. Gyori, John A. Bachman, Alpha Tom Kodamullil, Paul G. Plöger, Martin Hofmann‐Apitius, Daniel Domingo‐Fernándéz

The paper introduces STonKGs, a Transformer model trained on biomedical text and knowledge graphs, which outperforms single-modality models in classification tasks.

Bioinformatics · Jan 3, 2022Peer-reviewedBioinformatics