Author

Shradha Saraf

European Bioinformatics InstituteORCID 0000-0002-6433-8356Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:database / resource· 2 Organism:plant (other)· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Andrew R. JonesiD· 2 shared Bruno Contreras‐MoreiraiD· 2 shared Guy NaamatiiD· 2 shared Sandeep AmberkariD· 2 shared Sarah C. DyeriD· 2 shared Ana Maria CasasiD· 1 shared Andrew J. OlsoniD· 1 shared Dario CopettiiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersGenomics

Andrew R. JonesORCID

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2 papers

Recent·Most cited

A pan-gene catalogue of Asian cultivated rice

Bruno Contreras‐Moreira, Eshan Sharma, Shradha Saraf, Guy Naamati, Parul Gupta, Justin L. Elser, Dmytro Chebotarov, Kapeel M. Chougule, Zhenyuan Lu, Sharon Wei, Andrew J. Olson, Ian Tsang, Disha Lodha, Yong Zhou, Zhichao Yu, , Andrew R. Jones

The paper develops a pan-gene catalogue for Asian cultivated rice by creating a reference panel of 16 cultivars and identifying core and cultivar-specific genes.

bioRxiv · Feb 17, 2025 · PreprintGenomics

Calling pangenes from plant genome alignments confirms presence-absence variation

Bruno Contreras‐Moreira, Shradha Saraf, Guy Naamati, Ana Maria Casas, Sandeep Amberkar, Paul Flicek, Andrew R. Jones, Sarah C. Dyer

The paper introduces get_pangenes to identify pangenes from genome alignments, showing it outperforms existing methods and confirms presence-absence variation in barley.

Genome biology · Oct 5, 2023Peer-reviewedGenomics