Guy Naamati

A pan-gene catalogue of Asian cultivated rice

The paper develops a pan-gene catalogue for Asian cultivated rice by creating a reference panel of 16 cultivars and identifying core and cultivar-specific genes.

De novo annotation of the wheat pangenome reveals complexity and diversity of the hexaploid wheat pan-transcriptome

This study annotates the wheat pan-transcriptome de novo and identifies gene diversity and expression patterns across multiple wheat cultivars and tissues.

Calling pangenes from plant genome alignments confirms presence-absence variation

The paper introduces get_pangenes to identify pangenes from genome alignments, showing it outperforms existing methods and confirms presence-absence variation in barley.

Efficient masking of plant genomes by combining kmer counting and curated repeats

The paper introduces a hybrid repeat masking method for plant genomes using k-mer counting and curated repeat libraries, achieving efficient and accurate results.

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations.