Author

Christian Hallgrimson

School of Computing Science Simon Fraser University Burnaby BC V5A 1S6 CanadaORCID 0000-0002-6534-7879Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cell Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Approach:deep learning· 2 Research Focus:differential expression· 2 Organism:human· 2 Assay:imaging· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2

Frequent Co-Authors

Ghassan HamarnehiD· 3 shared Ismail M. KhateriD· 3 shared Ivan R. NabiiD· 3 shared Timothy H. WongiD· 3 shared Ben CardoeniD· 2 shared Yahongyang Lydia LiiD· 2 shared Claire A. ShouiD· 1 shared John LimiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 32 mutual co-author links

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3 shared papersCell Biology

Ghassan HamarnehORCID

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Author profile →

3 papers

Recent·Most cited

Adversarial erasing enhanced multiple instance learning (siMILe): Discriminative identification of oligomeric protein structures in single molecule localization microscopy

Christian Hallgrimson, Yahongyang Lydia Li, Claire A. Shou, Ben Cardoen, John Lim, Timothy H. Wong, Ismail M. Khater, Ivan R. Nabi, Ghassan Hamarneh

siMILe identifies condition-specific protein structures from SMLM data by using adversarial erasing and multiple instance learning, showing improved detection of caveolae and structural variations.

Advanced Intelligent Systems · Apr 30, 2026Peer-reviewedBioinformatics

SuperResNET GUI: model-free single molecule network analysis software achieves molecular resolution of Nup96

Yahongyang Lydia Li, Ismail M. Khater, Christian Hallgrimson, Ben Cardoen, Timothy H. Wong, Ghassan Hamarneh, Ivan R. Nabi

SuperResNET GUI analyzes single molecule data to reconstruct subcellular structures at molecular resolution without prior models.

bioRxiv · Mar 12, 2024Cell Biology

Super-resolution single molecule network analysis (SuperResNET) detects changes to clathrin structure by small molecule inhibitors

Timothy H. Wong, Ismail M. Khater, Christian Hallgrimson, Y. Lydia Li, Ghassan Hamarneh, Ivan R. Nabi

SuperResNET analyzes single-molecule imaging data to show that Pitstop 2 and Dynasore alter clathrin structure in distinct ways in HeLa cells.

bioRxiv · Mar 7, 2024 · PreprintCell Biology