Author

Ben Cardoen

University of British ColumbiaORCID 0000-0001-6871-1165Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cell Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:deep learning· 2 Assay:imaging· 2 Research Focus:benchmarking· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1

Frequent Co-Authors

Ghassan HamarnehiD· 3 shared Ivan R. NabiiD· 3 shared Christian HallgrimsoniD· 2 shared Ismail M. KhateriD· 2 shared Timothy H. WongiD· 2 shared Yahongyang Lydia LiiD· 2 shared Ashwin SamudreiD· 1 shared Bharat Joshi· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersCell Biology

Ghassan HamarnehORCID

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3 papers

Recent·Most cited

BioinformaticsAdvanced Intelligent SystemsPeer-reviewedApr 30, 2026

Adversarial erasing enhanced multiple instance learning (siMILe): Discriminative identification of oligomeric protein structures in single molecule localization microscopy

Christian Hallgrimson, Yahongyang Lydia Li, Claire A. Shou…·Ghassan Hamarneh

siMILe identifies condition-specific protein structures from SMLM data by using adversarial erasing and multiple instance learning, showing improved detection of caveolae and structural variations.

DOI 10.1002/aisy.202501159

humanimaging

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Cell BiologyCommunications BiologyPeer-reviewedNov 5, 2025

nERdy: network analysis of endoplasmic reticulum dynamics

Ashwin Samudre, Guang Gao, Ben Cardoen…·Ghassan Hamarneh

nERdy and nERdy+ accurately extract and represent ER network dynamics, revealing roles of Atlastin and Reticulon 4 in tubular matrix formation.

DOI 10.1038/s42003-025-08892-1

imagingdeep learning

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Cell BiologyAdvanced Intelligent SystemsPeer-reviewedDec 25, 2024

SuperResNET GUI: model-free single molecule network analysis software achieves molecular resolution of Nup96

Yahongyang Lydia Li, Ismail M. Khater, Christian Hallgrimson…·Ivan R. Nabi

SuperResNET GUI analyzes single molecule data to reconstruct subcellular structures at molecular resolution without prior models.

4 citations

spatial transcriptomicsmachine learning (classical)

𝕏 PostBluesky