Qian Liu

DiffMethylTools improves detection, annotation, and visualization of differential DNA methylation, outperforming existing tools on long-read methylomes.

LongReadSum provides fast, comprehensive quality control and signal summarization for long-read sequencing data across multiple platforms and formats.

The paper predicts transcriptional activity of HIV Tat single missense variants using a deep learning model trained on GigaAssay experiments, achieving a high correlation with experimental results.