Ayan Sadhukhan

Agroforestry reshapes soil bacterial communities to enhance Ricinus communis oil quality and bioactivity over monocropping: comparative metagenomics and culture-dependent insights

This study compares agroforestry and monocropping systems for castor crops, finding improved oil quality and soil bacterial communities in agroforestry.

Genome-wide association study and transcriptomics reveal the genetic architecture of alkalinity tolerance in Arabidopsis thaliana

This study identifies genetic variants and genes associated with alkalinity tolerance in Arabidopsis thaliana using GWAS and transcriptomics, revealing pathways and candidate genes for crop improvement.

Expression genome-wide association study and differential methylome profiling reveal upstream regulators of drought memory genes in Arabidopsis thaliana

This study identifies upstream regulators of drought memory genes in Arabidopsis thaliana using eGWAS and methylome profiling, revealing genetic-epigenetic mechanisms involved in transcriptional memory.

Genome-wide association study, network analysis, and reverse genetics pinpoint novel genes associated with seedling root growth variation of Arabidopsis thaliana under drought

This study identifies 68 genes associated with drought tolerance in Arabidopsis thaliana seedlings using GWAS and validates their roles through reverse genetics.

A desert endophyte, Priestia megaterium SI1-IITJ, improves fluoride stress tolerance by reducing fluoride content of plant tissues and perturbing salt tolerance and defense genes of Arabidopsis thaliana

This study identifies Priestia megaterium SI1-IITJ as a desert endophyte that reduces fluoride content in plants and modulates gene expression to improve fluoride stress tolerance in Arabidopsis thaliana.

Foliar application of nano urea results in higher biomass, chlorophyll, and nitrogen content than equimolar bulk urea through differential gene regulation in Arabidopsis thaliana

This study compares nano urea and bulk urea effects on Arabidopsis, finding nano urea increases biomass, chlorophyll, and nitrogen through differential gene regulation.

Effects of nano urea on growth and gene expression of Arabidopsis thaliana in hydroponics

This study shows that nano urea enhances biomass and chlorophyll content in Arabidopsis thaliana hydroponics compared to bulk urea, with differential gene expression patterns.

AP2/ERF transcription factors enriched in the drought-response transcriptome of the Thar desert tree Prosopis cineraria show higher copy number and greater DNA-binding affinity than orthologs in drought-sensitive species

This study identifies AP2/ERF transcription factors as key to drought tolerance in Prosopis cineraria, showing higher copy numbers and DNA-binding affinity compared to drought-sensitive species.

Deep learning-based method to identify disease-resistance proteins in Oryza sativa and relative species

This study develops a deep learning model to identify disease-resistance proteins in rice and related species, showing superior performance compared to traditional machine learning methods.

In silico characterization of five novel disease-resistance proteins in Oryza sativa sp. japonica against bacterial leaf blight and rice blast diseases

The paper identifies five novel disease-resistance proteins in rice that contribute to resistance against bacterial leaf blight and rice blast diseases through in silico analysis.