Author

Hiren Ghosh

University of FreiburgORCID 0000-0002-6752-0401Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:differential expression· 1 Assay:long-read sequencing· 1 Approach:statistical model· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Allison McGeeriD· 1 shared Amanda CarrolliD· 1 shared Derek R. MacFaddeniD· 1 shared Gian María RossoliniiD· 1 shared Hajo GrundmanniD· 1 shared Karel BřindaiD· 1 shared Mabel Budia-Silva· 1 shared Sandra ReuteriD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperGenomics

Allison McGeerORCID

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1 paper

Recent·Most cited

Neighbour Typing Using Long Read Sequencing Provides Rapid Prediction of Sequence Type and Antimicrobial Susceptibility of Klebsiella pneumoniae

Mabel Budia-Silva, Amanda Carroll, Hiren Ghosh, Allison McGeer, Tommaso Giani, Gian María Rossolini, Karel Břinda, William Paul Hanage, Hajo Grundmann, Derek R. MacFadden, Sandra Reuter

This paper evaluates RASE, a neighbor typing method using long-read sequencing, for predicting sequence types and antimicrobial susceptibility of Klebsiella pneumoniae in real time.

bioRxiv · Sep 3, 2025 · PreprintGenomics