Author

Allison McGeer

Mount Sinai HospitalORCID 0000-0001-5647-6137Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Immunology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Adrian Pasculescu· 1 shared Alyson Takaoka· 1 shared Amanda CarrolliD· 1 shared Anjali PateliD· 1 shared Anne‐Claude GingrasiD· 1 shared Chapin S. KoroseciD· 1 shared Corey R. ArnoldiD· 1 shared Derek R. MacFaddeniD· 1 shared

Activity by Year

2025-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperImmunology

Adrian Pasculescu

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologyMicrobiology SpectrumPeer-reviewedOct 8, 2025

Identification of plasmid-mediated tigecycline resistance tet(x4) and New Delhi Metallo-β-lactamase (NDM) in an Escherichia coli isolate from Canada

Laura F. Mataseje, Nicole A. Lerminiaux, Allison McGeer…·on behalf of Canadian Nosocomial Infection Surveillance Program (CNISP)

The paper identifies a tigecycline-resistant E. coli strain carrying tet(x4) and NDM-5 genes from a Canadian patient.

3 citations

E. coliexperimental assay

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GenomicsbioRxivPreprintSep 3, 2025

Neighbour Typing Using Long Read Sequencing Provides Rapid Prediction of Sequence Type and Antimicrobial Susceptibility of Klebsiella pneumoniae

Mabel Budia-Silva, Amanda Carroll, Hiren Ghosh…·Sandra Reuter

This paper evaluates RASE, a neighbor typing method using long-read sequencing, for predicting sequence types and antimicrobial susceptibility of Klebsiella pneumoniae in real time.

DOI 10.1101/2025.09.03.673989

bacteria (other)long-read sequencing

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ImmunologyJournal of VirologyPeer-reviewedJan 31, 2025

mRNA Vaccine-Induced SARS-CoV-2 Spike-Specific IFN-γ and IL-2 T-cell Responses are Predictive of Serological Neutralization and are Transiently Enhanced by Pre-Existing Cross-Reactive Immunity

Philip Samaan, Chapin S. Korosec, Patrick Budylowski…·Mario Ostrowski

This study examines how mRNA vaccine-induced T-cell responses correlate with neutralizing antibodies and how pre-existing immunity affects vaccine responses over time.

11 citationstop 2%

humanproteomics

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