Author

Hajo Grundmann

University of FreiburgORCID 0000-0002-9971-522XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Mabel Budia-Silva· 2 shared Sandra ReuteriD· 2 shared Alison Molloy· 1 shared Allison McGeeriD· 1 shared Amanda CarrolliD· 1 shared Ana BudimiriD· 1 shared Anthony P. UnderwoodiD· 1 shared Corin YeatsiD· 1 shared

Activity by Year

2025-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersGenomics

Mabel Budia-Silva

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

amr.watch - monitoring antimicrobial resistance trends from global genomics data

Sophia David, Julio Diaz Caballero, Natacha Couto, Khalil Abudahab, Nabil-Fareed Alikhan, Corin Yeats, Anthony P. Underwood, Alison Molloy, Diana Connor, Heather M. Shane, Philip Ashton, Hajo Grundmann, Matthew T. G. Holden, Edward J. Feil, Sonia B. Sia, , David M. Aanensen

amr.watch provides an interactive platform to analyze and visualize AMR trends from global WGS data, enabling ongoing situational awareness for research and policy.

PLOS Global Public Health · Nov 24, 2025Peer-reviewedGenomics

Neighbour Typing Using Long Read Sequencing Provides Rapid Prediction of Sequence Type and Antimicrobial Susceptibility of Klebsiella pneumoniae

Mabel Budia-Silva, Amanda Carroll, Hiren Ghosh, Allison McGeer, Tommaso Giani, Gian María Rossolini, Karel Břinda, William Paul Hanage, Hajo Grundmann, Derek R. MacFadden, Sandra Reuter

This paper evaluates RASE, a neighbor typing method using long-read sequencing, for predicting sequence types and antimicrobial susceptibility of Klebsiella pneumoniae in real time.

bioRxiv · Sep 3, 2025 · PreprintGenomics

TRACKING CLONAL AND PLASMID TRANSMISSION IN COLISTIN AND CARBAPENEM RESISTANT KLEBSIELLA PNEUMONIAE

Ifeoluwa J. Akintayo, Marko Siroglavić, Daria Frolova, Mabel Budia-Silva, Hajo Grundmann, Zamin Iqbal, Ana Budimir, Sandra Reuter

This study tracks clonal and plasmid transmission in colistin- and carbapenem-resistant K. pneumoniae using short and long read sequencing, revealing complex plasmid networks and highlighting the need for full-length sequencing to understand resistance spread.

mSystems · Jan 10, 2025Peer-reviewedMicrobiology