Author

Pamela Nicholson

University of BernORCID 0000-0002-6804-3416Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:genome assembly· 3 Assay:whole-genome sequencing· 3 Research Focus:database / resource· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1

Frequent Co-Authors

Laurent FalquetiD· 2 shared Tim Davalan· 2 shared Abdellatif EssahibiiD· 1 shared Ahmed QaddouryiD· 1 shared Al‐Sayed Al‐SoudyiD· 1 shared Alexander Theodor PetterssoniD· 1 shared Bruno StuderiD· 1 shared Carmen Rojas Uglade· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersGenomics

Laurent FalquetORCID

Mutual co-authors in cluster

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4 papers

Recent·Most cited

GenomicsbioRxivPreprintSep 15, 2026

Chromosome-level, haplotype-resolved genome assembly of the tanniferous forage legume big trefoil (Lotus pedunculatus Cav.) using CiFi

Alexander Theodor Pettersson, Yutang Chen, Tim Davalan…·Roland Kölliker

This paper presents a chromosome-level, haplotype-resolved genome assembly of big trefoil using CiFi, revealing two phased haplotypes and supporting gene annotation.

DOI 10.64898/2026.09.09.749848

plant (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintMay 29, 2026

Chromosome-level genome assembly of the swallowtail butterfly Parides eurimedes mylotes is a valuable resource for studying wing coloration

Praveen Kumar Jaya Balaji, Tim Davalan, Pamela Nicholson…·Viola Valentina Vogler‐Neuling

The paper presents a chromosome-level genome assembly for Parides eurimedes mylotes, enabling studies on wing coloration genetics and evolutionary biology.

DOI 10.64898/2026.05.27.728091

whole-genome sequencingstatistical model

𝕏 PostBluesky

GenomicsScientific DataPeer-reviewedAug 15, 2025

Chromosome-level phased genome assembly of the Argan tree Sideroxylon spinosum L.

Ivan D. Mateus, Abdellatif Essahibi, Pamela Nicholson…·Didier Reinhardt

The paper presents a chromosome-level phased genome assembly of the Argan tree using PacBio HiFi and Hi-C data, achieving high completeness and resolving telomere-to-telomere chromosomes.

4 citations

plant (other)whole-genome sequencing

𝕏 PostBluesky

Developmental BiologyeLifePeer-reviewedJan 3, 2023

Molecular characterization of cell types in the squid Loligo vulgaris

Jules Duruz, Marta Sprecher, Jenifer C Kaldun…·Simon G. Sprecher

This study uses single-cell transcriptomics to characterize cell types in the squid Loligo vulgaris and identifies key markers for major nervous system components.

28 citationstop 3%

non-human primatescRNA-seq

𝕏 PostBluesky