Author

David A. Baker

University of Wisconsin–MadisonORCID 0000-0002-6811-8238Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

David A. Baker1 paper

Biology Disciplines

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Genomics· 2 Genetics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:non-human primate· 2 Research Focus:cell type annotation· 1 Assay:long-read sequencing· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-exome sequencing· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

David H. O’ConnoriD· 3 shared Julie A. KarliD· 3 shared Roger W. WisemaniD· 3 shared Trent M. PralliD· 3 shared Cecilia G. ShortreediD· 2 shared Hailey E. BussaniD· 2 shared Amelia K. HajiD· 1 shared Emma K. NeumanniD· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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3 shared papersGenomics

David H. O’ConnorORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintDec 10, 2023

Complete genomic assembly of Mauritian cynomolgus macaque killer immunoglobulin-like receptor and natural killer group 2 haplotypes

Trent M. Prall, Julie A. Karl, Joshua M. Varghese…·David H. O’Connor

The paper assembles KIR and NKG2 genomic haplotypes in Mauritian cynomolgus macaques using long-read sequencing and develops a strategy for genotyping using short-read data.

DOI 10.1101/2023.12.10.570943

non-human primatewhole-exome sequencing

𝕏 PostBluesky

GenomicsBMC GenomicsPeer-reviewedMar 12, 2021

Consistent ultra-long DNA sequencing with automated slow pipetting

Trent M. Prall, Emma K. Neumann, Julie A. Karl…·David H. O’Connor

SNAILS improves long-read sequencing by automating slow pipetting, increasing read length and consistency in Oxford Nanopore library preparation.

20 citations

whole-genome sequencingexperimental assay

𝕏 PostBluesky

GeneticsImmunogeneticsPeer-reviewedFeb 28, 2020

Characterization of 100 extended major histocompatibility complex haplotypes in Indonesian cynomolgus macaques

Cecilia G. Shortreed, Roger W. Wiseman, Julie A. Karl…·David H. O’Connor

The paper characterizes 100 extended MHC haplotypes in Indonesian cynomolgus macaques using sequencing and haplotype analysis to improve preclinical research applications.

24 citations

non-human primatelong-read sequencing

𝕏 PostBluesky