Author

Joshua M. Varghese

University of Wisconsin–MadisonORCID 0000-0001-9777-0818Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:non-human primate· 2 Research Focus:variant calling· 2 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Assay:whole-exome sequencing· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

David H. O’ConnoriD· 2 shared Julie A. KarliD· 2 shared Roger W. WisemaniD· 2 shared Trent M. PralliD· 2 shared Aparna Pal· 1 shared David A. BakeriD· 1 shared Hailey E. BussaniD· 1 shared Jeffrey RogersiD· 1 shared

Activity by Year

2023-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersGenomics

David H. O’ConnorORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintDec 10, 2023

Complete genomic assembly of Mauritian cynomolgus macaque killer immunoglobulin-like receptor and natural killer group 2 haplotypes

Trent M. Prall, Julie A. Karl, Joshua M. Varghese…·David H. O’Connor

The paper assembles KIR and NKG2 genomic haplotypes in Mauritian cynomolgus macaques using long-read sequencing and develops a strategy for genotyping using short-read data.

DOI 10.1101/2023.12.10.570943

non-human primatewhole-exome sequencing

𝕏 PostBluesky

GenomicsGenome ResearchPeer-reviewedMar 1, 2023

Complete sequencing of a cynomolgus macaque major histocompatibility complex haplotype

Julie A. Karl, Trent M. Prall, Hailey E. Bussan…·David H. O’Connor

The paper fully assembles and annotates a cynomolgus macaque MHC haplotype using long-read sequencing, revealing structural diversity and gene counts different from previous rhesus macaque haplotypes.

20 citations

non-human primatewhole-genome sequencing

𝕏 PostBluesky