Jun Soung Kwak

Imputed graph-genotyped structural variants identify regulatory haplotypes associated with gene expression in Atlantic salmon

Ancient persistence and recurrent emergence of structural variants across divergent Atlantic salmon lineages

The paper investigates the evolutionary origins of shared structural variants across Atlantic salmon lineages, finding they result from ancient persistence, recurrent mutation, and lineage-specific frequency changes.

A major locus on chromosome 14 impacts developmental variation of Atlantic salmon smoltification

The paper identifies a major locus on chromosome 14 associated with gill gene expression and somatic growth in Atlantic salmon during smoltification.

A compositional reanalysis of poly(A)-selected RNA-seq reveals tank effects but no survival-associated differences

The paper analyzes unmapped reads from Atlantic salmon RNA-seq to detect microbial signals, finding tank-specific effects but no survival or sex associations.

Parallel selection in domesticated Atlantic salmon from divergent founders including parallel selection on WGD-derived homeologous regions

The paper examines genomic responses to domestication in Atlantic salmon, revealing parallel selection on MHC genes and WGD-derived homeologous regions.