Marie Saitou

The paper investigates the evolutionary origins of shared structural variants across Atlantic salmon lineages, finding they result from ancient persistence, recurrent mutation, and lineage-specific frequency changes.

This study evaluates a course redesign in a graduate genomics course, finding improved perceived navigability but persistent challenges in course coherence.

This study shows that no-take zones in linear coastal systems improve population recovery when aligned with larval dispersal direction, but their effectiveness depends on spatial placement and dispersal patterns.

The paper evaluates a SNP panel's ability to detect hybridization across generations in European lobsters using resampling-based methods and empirical data.

This study compares gene expression in human breast tissue with other epithelial secretory tissues to identify conserved and tissue-specific regulatory programs.

The paper analyzes eQTL data in Atlantic salmon to show long-term dosage balance maintenance after a 100 million-year-old genome duplication.

This study examines the evolution of gig immune genes in teleosts, focusing on Atlantic salmon, revealing distinct evolutionary trajectories and regulatory mechanisms.

The paper identifies a major locus on chromosome 14 associated with gill gene expression and somatic growth in Atlantic salmon during smoltification.

This study identifies impaired cell wall biomechanics as the cause of delayed trap closure in the Venus flytrap mutant DYSCALCULIA, linking mechanosensing and Ca2+ signaling to trap kinetics.

The paper identifies switch-like genes across multiple tissues and links their expression patterns to disease susceptibility, finding tissue-specific and universally switch-like genes with potential therapeutic implications.

The paper analyzes unmapped reads from Atlantic salmon RNA-seq to detect microbial signals, finding tank-specific effects but no survival or sex associations.

The paper examines genomic responses to domestication in Atlantic salmon, revealing parallel selection on MHC genes and WGD-derived homeologous regions.

The paper investigates how allele frequency differences of causal variants impact PRS portability between European and African populations, finding they significantly reduce accuracy.

The paper identifies adaptive genomic structural variants across 26 populations using a network-based method and finds 577 variants with high population distribution, some overlapping with coding sequences or GWAS traits.

The paper identifies the origins of salivary proteins and reveals gene repertoires specific to fetal and adult salivary glands, showing functional diversity is driven by transcriptional regulators.

The paper identifies insertion sites of polymorphic duplications and finds a HERC2 haplotype under selection in European populations.

The paper investigates the evolutionary history of the GSTM1 gene deletion in East Asian populations, finding evidence of a soft sweep and its association with disease susceptibility.