Author

Xiang‐Qun Xie

University of PittsburghORCID 0000-0002-6881-6175Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Approach:graph neural network· 1 Organism:human· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Jiayi YuaniD· 1 shared Jingxuan GeiD· 1 shared Lirong WangiD· 1 shared Peihao FaniD· 1 shared Ruofan JiniD· 1 shared Siwei Xie· 1 shared Songwei GeiD· 1 shared Tianjian Liang· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperImmunology

Jiayi YuanORCID

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2 papers

Recent·Most cited

ImmunologybioRxivPreprintApr 29, 2025

EpiMII: Integrating Structure and Graph Neural Networks for MHC-II Epitope and Neoantigen Design

Jiayi Yuan, Xiaowei Xu, Ze‐Yu Sun…·Zhiwei Feng

EpiMII improves MHC-II epitope and neoantigen design by integrating structural features with graph neural networks, achieving higher accuracy and in vivo efficacy in tumor models.

1 citation

humanprotein structure

𝕏 PostBluesky

Systems BiologyPLoS ONEPeer-reviewedNov 7, 2018

A computational strategy for finding novel targets and therapeutic compounds for opioid dependence

Xiaojun Wu, Siwei Xie, Lirong Wang…·Wei Wu

This paper develops a computational strategy to identify novel targets and therapeutic compounds for opioid dependence using time course gene expression data from mouse striatum.

11 citations

mousebulk RNA-seq

𝕏 PostBluesky