Author

Stuart C. Clarke

University Hospital Southampton NHS Foundation TrustORCID 0000-0002-7009-1548Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:experimental assay· 2 Assay:whole-genome sequencing· 2 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:ecology & biodiversity· 1 Assay:metagenomics· 1 Research Focus:phylogenetics / evolution· 1 Approach:statistical model· 1

Frequent Co-Authors

David William ClearyiD· 2 shared Denise E. MorrisiD· 2 shared Rebecca Anderson· 2 shared Abdullah W. Brooks· 1 shared Abigail L. Coughtrie· 1 shared Ahmed Ghazi Alattraqchi· 1 shared Alejandra C. CorsoiD· 1 shared Alex R. Kraaijeveld· 1 shared

Activity by Year

2017-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersMicrobiology

David William ClearyORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

MicrobiologybioRxivPreprintJun 12, 2025

The road less travelled: Exploring the genomic characteristics and antimicrobial resistance potential of Acinetobacter baumannii from the indigenous Orang Asli community in Peninsular Malaysia

Soo Sum Lean, Denise E. Morris, Rebecca Anderson…·Chew Chieng Yeo

This study analyzes A. baumannii isolates from the Orang Asli community in Malaysia, revealing genetic diversity, virulence factors, and antibiotic resistance genes similar to clinical isolates.

DOI 10.1101/2025.06.12.659425

humanwhole-genome sequencing

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GenomicseLifePeer-reviewedJul 14, 2021

The role of interspecies recombinations in the evolution of antibiotic resistant pneumococci

Joshua C D'Aeth, Mark PG van der Linden, Lesley McGee…·David William Cleary

The paper reconstructs the evolutionary histories of antibiotic-resistant pneumococcal lineages PMEN3 and PMEN9, showing how interspecies recombination contributes to antibiotic resistance and serotype switching.

43 citationstop 3%

humanwhole-genome sequencing

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MicrobiologybioRxivPreprintJan 9, 2017

Epidemiological and ecological modelling reveal diversity in microbial population structures from a cross-sectional community swabbing study

Abigail L. Coughtrie, Denise E. Morris, Rebecca Anderson…·Stuart C. Clarke

The paper uses epidemiological and ecological modeling to analyze microbial community structures in nasal swabs, revealing age and seasonality effects on respiratory pathogen carriage and interactions.

DOI 10.1101/099069

humanmetagenomics

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