Author

Derya Aytan-Aktug

Technical University of DenmarkORCID 0000-0002-7086-8791Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Organism:chicken / avian· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Assay:long-read sequencing· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Saria OtaniiD· 2 shared Darina ČejkováiD· 1 shared Frank M. AarestrupiD· 1 shared James J. DavisiD· 1 shared Jana PalkovičováiD· 1 shared Jana SchwarzerováiD· 1 shared Judit SzarvasiD· 1 shared katarina stredanska· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersMicrobiology

Saria OtaniORCID

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2 papers

Recent·Most cited

MicrobiologyMicrobiology SpectrumPeer-reviewedMar 26, 2026

Dynamic changes in the plasmidome and resistome in the gastrointestinal tract of chickens

Marketa Rysava, Jana Palkovičová, katarina stredanska…·Monika Dolejská

This study uses long-read sequencing to analyze plasmidome and resistome in chicken fecal samples, revealing ARGs associated with 26 antibiotic classes and their dynamic spread.

1 citation

chicken / avianlong-read sequencing

𝕏 PostBluesky

BioinformaticsmSystemsPeer-reviewedApr 6, 2022

PlasmidHostFinder: Prediction of plasmid hosts using random forest

Derya Aytan-Aktug, Philip T. L. C. Clausen, Judit Szarvas…·Frank M. Aarestrup

This paper develops a random forest model to predict plasmid hosts, achieving 0.662 and 0.867 Matthews correlation coefficients at species and order levels, respectively.

25 citations

bacteria (other)machine learning (classical)

𝕏 PostBluesky